PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G080400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 252aa    MW: 27756.9 Da    PI: 5.67
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.44.6e-4381421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                         lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+L +         +e + w++F+ r++++a+g r++r+t sgyWka
  Brast01G080400.1.p   8 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLSEiharlcGGGSEGEPWFYFCARQEREARGGRPSRTTPSGYWKA 98 
                         79****************************99***************8445655422336679**************************** PP

                 NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+   v+   +++ +g++kt+vfy+grap+g+kt+W m+eyr+
  Brast01G080400.1.p  99 AGTPGVVYPVsGRRPIGMRKTMVFYRGRAPSGTKTKWKMNEYRA 142
                         *****9998757888***************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-483179IPR003441NAC domain
PROSITE profilePS5100547.9188179IPR003441NAC domain
PfamPF023651.2E-239141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMADGVQLPP GYRFYPTEEE LICFYLRNKL DSRRDDIERV IPVVDVYSVD PWQLSEIHAR  60
LCGGGSEGEP WFYFCARQER EARGGRPSRT TPSGYWKAAG TPGVVYPVSG RRPIGMRKTM  120
VFYRGRAPSG TKTKWKMNEY RALQHHHEED DAHARAGAPA VAPASQLRSE FSLCRLYTKS  180
GTLRQFDRRP LAAAADNPGP STAAAVSPDD DDGSGGSMQP HEEAELMEGG GGDPYGDDVA  240
TLAALLYWPE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-30618515171NO APICAL MERISTEM PROTEIN
1ut4_B5e-30618515171NO APICAL MERISTEM PROTEIN
1ut7_A5e-30618515171NO APICAL MERISTEM PROTEIN
1ut7_B5e-30618515171NO APICAL MERISTEM PROTEIN
4dul_A5e-30618515171NAC domain-containing protein 19
4dul_B5e-30618515171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-140AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567294.11e-145PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR32e-62NAC90_ARATH; NAC domain-containing protein 90
TrEMBLI1HTN21e-145I1HTN2_BRADI; Uncharacterized protein
STRINGBRADI2G55780.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-63NAC domain containing protein 90